You spent years training to become a doctor, not to manage complex tax structures or navigate Medicare billing reconciliations. Between patient care, administrative demands, and staying current with medical advances, the last thing you need is accounting stress. But private practice brings unique financial challenges that generic accountants simply don’t understand.
Walker Hill provides specialist accounting services to doctors and medical professionals across Brisbane and Australia. We handle your tax compliance, practice finances, and business structure so you can focus on patient care. You’ll know exactly where your money’s going, how to protect your assets, and how to build wealth throughout your medical career.
Types of Doctors We Provide Accounting Services For
The medical profession isn’t one-size-fits-all, and neither is the accounting behind it. We work with doctors across a wide range of specialisations, each with distinct financial complexities.
- General practitioners
- Specialists
- Surgeons
- Procedural specialists
- Psychiatrists and mental health specialists
- Emergency physicians and hospitalists
- Locum doctors
- Practice principals and partners
Whether you’re a recent registrar entering private practice or an established specialist planning succession, we set up accounting systems that match how your medical practice actually operates. The financial challenges you face depend on your specialty, your practice model, and your career stage.
Accounting Services We Offer Doctors
Medical Accounting and Tax Compliance
We handle your tax returns, Business Activity Statements, and all tax obligations specific to the healthcare industry. You won’t miss deadlines or face penalties. Our medical accountants understand the unique aspects of healthcare taxation, from Medicare reconciliations to private billing, CGT implications of selling a practice, and how service entities interact with your personal tax position. Our BAS agent services keep you compliant year-round.
Bookkeeping Solutions for Medical Practices
our practice transactions get recorded, categorised, and reconciled monthly. You’ll know what’s in the bank, what patients owe, what you owe suppliers and staff. We provide comprehensive bookkeeping services built around medical practices, not generic small business templates. Our bookkeeping services handle the daily financial admin that pulls you away from patient care.
Business Structure Advice and Asset Protection
Operating through the wrong structure can cost you hundreds of thousands over your medical career. We advise on whether you should use a company, trust, service trust, or combination structure. We help you understand service entities, how to structure practice ownership, how to bring in partners, and how to protect your business assets and personal wealth from professional liability. Our business structuring services are tailored to medical professionals.
Tax Planning and Wealth Building Strategies
We work with you throughout your medical career to structure your financial affairs in a way that legally minimises tax liabilities and builds wealth. That means timing income properly, maximising super contributions, structuring investment properties correctly, planning for practice sale or succession, and ensuring your family trusts are being used effectively. Our approach to business tax planning focuses on strategies that deliver real tax savings over your career.
Payroll Management and Compliance
Got practice nurses, reception staff, or practice managers? We handle payroll tax calculations, PAYG withholding, superannuation guarantee obligations, Single Touch Payroll reporting, and compliance with employment laws. Everything stays compliant and gets lodged on time. Our payroll services take the burden off your practice manager.
Cash Flow Management and Practice Profitability
Medical practices deal with payment delays, Medicare processing times, private health insurer payment cycles, and patients who don’t pay on time. We build cash flow forecasts that account for these timing issues, help you understand your true practice profitability, identify where revenue is leaking, and advise on pricing strategies that improve your bottom line without compromising patient care.
Business Advisory for Practice Growth
We work closely with you to interpret your practice numbers and give you advice on growth decisions. Wondering if you can afford to hire another doctor? Considering buying into the practice? Thinking about opening a second location? Planning to reduce clinical hours? We provide the financial analysis and business advisory support doctors need to make informed decisions through our business advisory services.
Succession Planning and Practice Sale
Planning to retire, reduce hours, or exit your practice? We help you structure the transition to maximise the sale price, minimise CGT, ensure you’re not leaving money on the table, and coordinate with legal and financial advisors. Succession planning needs to start years before you intend to exit, not months. We guide doctors through this process so your financial future is secure.
Why Do Doctors Need Specialist Accounting?
The medical profession operates under unique financial structures that traditional accountants often misunderstand. You’re likely working through service trusts or service entities, your income might be split between personal services income and business income, you’re dealing with Medicare bulk billing or mixed billing models, your professional indemnity costs are significant, and your liability exposure requires careful asset protection.
Structuring and Defending Medical Service Entities
Medical accounting services need to understand how service entities work, when they’re appropriate, how to structure them correctly, and how to defend them if the ATO queries the arrangement. Get it wrong and you could face personal services income attribution, lose the tax benefits entirely, and face a tax audit that costs more than the disputed amount.
Managing Healthcare-Specific Tax Obligations
The healthcare sector also has specific tax obligations that many practitioners mishandle. You might have payroll tax obligations if your total wages bill crosses the threshold. You need to understand FBT implications if you’re providing benefits to staff. If you’re a procedural specialist, you need to account for consumables inventory properly. Miss these and you’re either overpaying tax or exposing yourself to ATO scrutiny.
Practice Valuations, Partnerships, and Succession Planning
Then there’s the complexity of practice valuations, partnership agreements, and succession planning. A general practice might be worth three times annual billings. A specialist practice might be worth less because goodwill doesn’t transfer as easily. Understanding what your practice is actually worth, how to structure a sale, and how to minimise CGT requires specialist knowledge of the medical industry.
Separating Practice and Personal Finances
Many practitioners also struggle with separating practice finances from personal finances. Your service entity might be profitable, but if you’re not paying yourself properly, your personal cash flow suffers. Your practice might look busy, but if you’re not tracking profitability by service type or doctor, you won’t know where your profit is actually coming from.
How Specialist Medical Accountants Add Real Value
That’s where specialised medical accountants come in. We understand the healthcare industry, the regulations that affect medical practices, the best practice structures for different specialties, and the common financial mistakes that cost doctors hundreds of thousands over their careers. Our extensive experience with medical professionals means we can give you quality advice specific to your situation, not generic guidance that doesn’t apply to healthcare.
Common Accounting Challenges Doctors Face
Every doctor hits the same financial pain points. The ones who build wealth solve these problems early in their medical career.
Understanding Service Entities and Tax Structures
Many doctors work through service trusts or service companies without really understanding how they work, why they exist, what the risks are, or whether they’re getting the benefits they should. Some practitioners have structures that were set up years ago but haven’t been reviewed since. Others use structures that don’t actually provide the tax benefits they think they’re getting.
Walker Hill reviews your current structure, explains how it actually works, identifies whether you’re getting the intended benefits, and advises on whether changes are needed. We ensure your service entity arrangements comply with ATO requirements, your documentation supports the structure, and you’re not exposing yourself to personal services income issues. If your structure isn’t right, we’ll help you fix it before it becomes a problem.
Managing Irregular Income and Tax Instalments
Your income can vary significantly month to month depending on patient volumes, billing cycles, leave periods, and seasonal variations in your specialty. Medicare payments might come through weekly, private health insurer payments might take 30-60 days, and gap payments from patients can be even slower. Meanwhile, the ATO expects quarterly PAYG instalments based on your estimated annual income.
Walker Hill helps you set your tax instalments at the right level so you’re not overpaying throughout the year or facing a massive bill at tax time. We track your income as it comes in, adjust your instalments when your circumstances change, and ensure you’re setting aside enough to cover your tax position without tying up cash unnecessarily.
Maximising Tax Deductions While Staying Compliant
Medical professionals have significant deductible expenses, but many practitioners miss deductions or claim things incorrectly. You can claim professional indemnity insurance, medical registration, continuing medical education, professional subscriptions, travel to conferences, home office expenses if you do admin work from home, and equipment you purchase for your practice. Miss these and you’re paying more tax than necessary.
Walker Hill tracks your deductible expenses throughout the year so nothing gets missed when we prepare your tax returns. We also advise on what you can claim, what requires documentation, and what triggers ATO scrutiny. Our guide to tax deductions for small businesses covers what medical professionals need to know, including work from home deductions for doctors doing administrative work outside the practice.
Planning for Retirement and Superannuation
Doctors often have complex super situations. You might have employer super from public hospital work, self-managed super from private practice income, defined benefit schemes from earlier in your career, and super from locum work. Contribution caps matter more when you’re a high earner, concessional contribution limits can be exceeded accidentally, and super planning needs to coordinate with your overall tax strategy.
Walker Hill helps you optimise your super contributions, ensure you’re not exceeding caps, advise on whether a self-managed super fund makes sense for your situation, and coordinate your super strategy with your overall wealth building plan. We also help you understand your retirement income needs and whether you’re on track to achieve your financial goals.
Dealing with Practice Debt and Equipment Finance
Setting up or buying into a practice often requires significant debt. Equipment costs can run into hundreds of thousands for procedural specialists. Fitout costs for a new practice location can exceed half a million. Managing this debt alongside personal mortgages, investment properties, and living expenses requires careful cash flow management and tax planning.
Walker Hill advises on the tax implications of different financing structures, whether to buy equipment outright or lease, how to structure practice loans to maximise deductibility, and how to manage your overall debt position so you’re not over-leveraged. We also help you understand whether taking on more debt for practice expansion makes financial sense given your current position.
Understanding Partnership Agreements and Practice Buy-Ins
Buying into a practice or taking on partners changes your financial position significantly. Partnership agreements affect profit distribution, decision-making, liability exposure, and exit options. Many doctors sign partnership agreements without fully understanding the financial implications or having proper independent advice.
Walker Hill reviews partnership agreements before you sign, explains the financial implications, identifies issues that need negotiating, and ensures you understand what you’re committing to. We also advise on structuring practice buy-ins to minimise tax, how to value your partnership interest, and what happens financially if you want to exit later.
Managing Multiple Income Sources and Employers
Many doctors have income from multiple sources: private practice, public hospital sessional work, teaching positions, medico-legal reports, and independent contractor arrangements. Each has different tax treatment, different super obligations, different documentation requirements, and different timing of payments.
Walker Hill consolidates all your income sources, ensures everything is reported correctly, manages your overall tax position across different income types, and coordinates with multiple employers or payers to ensure your tax withholding is set correctly. You’ll have one clear picture of your total financial position instead of scattered information across multiple payslips and payment summaries.
Protecting Assets from Professional Liability
Medical professionals face higher liability exposure than most businesses. A malpractice claim, patient complaint, or regulatory investigation can put your personal assets at risk if your structure doesn’t provide adequate protection. Professional indemnity insurance is essential, but it’s not enough on its own.
Walker Hill advises on structures that separate your practice assets from your personal wealth, how to hold investment properties outside your name, how to use family trusts effectively, and how to ensure your spouse’s assets aren’t exposed to your professional liability. We work with your legal advisors to ensure your asset protection strategy is comprehensive and actually works if tested.
How Walker Hill Supports Doctors?
We don’t treat doctors like every other small business client. The financial challenges, regulatory environment, and career trajectory of medical professionals are unique. Our services reflect that extensive experience with the healthcare industry.
Personalised Advice Based on Your Career Stage
We start by understanding your specific situation. Are you entering private practice for the first time? Buying into an established practice? Planning to reduce clinical hours? Considering a practice sale? Your accounting needs differ depending on your career stage and your goals for your financial future.
Integrated Practice and Accounting Systems
On the medical accounting side, we integrate your practice management software with cloud accounting systems so billing data flows through automatically. You won’t be manually entering invoices. Medicare reconciliations happen monthly. Your books stay current and your financial reporting reflects what’s actually happening in your practice.
Proactive, Year-Round Tax Planning
Tax planning happens proactively throughout the year. We don’t wait until June to tell you what you owe. We work with you to time income, maximise legitimate deductions, optimise super contributions, and structure your affairs to legally minimise your tax position. You’ll know what’s coming well before lodgement.
Practice-Level Reporting That Drives Better Decisions
For practice principals, we provide financial reporting that shows practice profitability by doctor, by service type, by patient payment method. You’ll know which aspects of your practice are profitable, where revenue is leaking, and what changes would improve your bottom line.
Direct Access to Medical Accounting Specialists
You’ll also have direct access to specialist accountants who understand the medical profession. Got a question about structuring a new service entity? Need a second opinion on a partnership agreement? Want to know the tax implications of a practice purchase? Ask and you’ll get quality advice based on your actual situation, not generic guidance that doesn’t apply to healthcare professionals.
Brisbane Based Accountants, Supporting Doctors Locally and Australia Wide
Find Us in Brisbane
We’re based in Petrie Terrace, close to the CBD and accessible from anywhere in greater Brisbane. You can meet us in person, call, or email through your practice questions and financial concerns.
Office Address: Level 2, 80 Petrie Terrace, Brisbane, QLD 4000
Phone: 07 3367 3155
Email: support@walkerhill.com.au
Office Hours: Monday to Friday, 8:30am — 5:00pm
Appointments available outside business hours by arrangement if you need to meet after hours or between clinical sessions.
Virtual Accounting Services for Doctors Nationwide
You don’t need to be in Brisbane to work with us. We support doctors right across Australia using cloud-based systems, video calls, and secure document platforms. Based in Sydney, Melbourne, Perth, or regional areas? You’ll get the same level of service, medical industry expertise, and specialist knowledge.
Everything happens online. You upload your practice data and receipts as they come in. We handle all the bookkeeping and taxation services on the back end. You get regular financial reporting that keeps you informed about your practice financial health.
Book a Free Doctor Accounting Strategy Session
We’ll review your current structure, identify gaps in your tax position or asset protection, and show you how we’d handle your finances going forward. No obligation, no pressure. Just a straight conversation with accountants who specialise in the medical profession.
This free consultation covers your business structure, tax obligations, and what a proper accounting setup looks like for your specialty and career stage. We’ll discuss strategies specific to your situation, how to improve practice profitability, and what changes would deliver the most value.
Call us on 07 3367 3155 or email support@walkerhill.com.au to book your session.
Xero Partner and Finalist.
Xero Accounting Partner of the Year Finalist FY22
FAQs About Doctor Accounting
What's the difference between medical accountants and regular accountants?
Medical accountants understand service entities, how they should be structured, when they’re appropriate, and how to defend them to the ATO. We know the healthcare sector regulations, billing cycles, Medicare reconciliation, how to structure practice ownership, and the specific tax issues doctors face. Regular accountants might get your tax return lodged, but they won’t understand the nuances of medical practice finances or give you advice that optimises your position over your career.
Do I need a service entity or service trust?
It depends on your income level, your practice structure, whether you have a spouse who can participate in the business, and your long-term plans. Service entities can provide tax benefits and asset protection when structured correctly, but they add complexity and cost. Many practitioners earning under $200K don’t benefit enough to justify the additional compliance. We review your specific situation and advise whether a service entity makes sense for you.
How do I know if I'm paying too much tax?
If you’re not using a service entity when you should be, missing deductible expenses, not optimising super contributions, or have investments structured in your personal name when they should be in a trust, you’re probably paying more than necessary. A proper review by specialist accountants will identify where you’re leaving money on the table. The difference can be tens of thousands annually for high-earning specialists.
Should I use a self-managed super fund?
SMSFs can make sense for doctors with substantial super balances who want more control over investments, want to invest in direct property, or want to buy their practice premises in super. However, they add complexity, cost, and compliance obligations. You need enough in super to justify the setup and running costs, usually at least $200K to $300K. We advise on whether an SMSF suits your situation or whether you’re better off in a retail or industry fund.
How should I structure buying into a practice?
The structure depends on whether you’re buying the business, the premises, or both, whether there are existing partners, and what your long-term plans are. You might buy in through your service entity, personally, or through a combination. Each has different tax implications, asset protection considerations, and financing requirements. We work with your legal advisors to ensure the structure protects you and minimises tax.
What expenses can I claim as a doctor?
You can claim professional indemnity insurance, medical registration, continuing medical education, professional subscriptions, travel to conferences, home office expenses, equipment, medical journals, and practice-related costs. If you work through a service entity, expenses get claimed by the entity, not personally. If you’re an employee, claiming work-related expenses is more limited. We advise on what’s deductible in your specific situation and ensure proper documentation.
When should I start thinking about succession planning?
Start planning at least five years before you intend to reduce hours or sell your practice. Building practice value, finding successors, structuring the transition, and minimising CGT all take time. Many doctors leave it too late, end up accepting lower sale prices, and pay more tax than necessary. Early planning gives you options and ensures your financial future is secure when you’re ready to slow down.
Let’s talk accounting.
Fill in the enquiry form below and one of our team members will be in touch shortly!


